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Publications

Peer-refereed Journals

  1. Lurie, K.L., Smith, G.T., Khan, S.A., Liao, J.C., and A.K. Ellerbee, "Three-dimensional, distendable bladder phantom for optical coherence tomography and white light cystoscopy," J. Biomed. Opt. 19 (3), 036009 (2014). doi: 10.1117/1.JBO.19.3.036009
  2. Lee, H., Sudkamp H., Marvdashti, T., and A.K. Ellerbee, "Interleaved Optical Coherence Tomography," Opt. Exp 21 (22), 26542-26556 (2013). (Also featured in the Virtual Journal for  Biomedical Optics)
  3. Stan, C.A., Ellerbee, A.K., Guglielmini, L., Stone, H.A., and G.M. Whitesides, "The magnitude of lift forces acting on drops and bubbles in liquids flowing inside microchannels," Lab Chip, 13(3), 365-376 (2013).
  4. Gu, R.Y., Lurie, K.L., Pipes, M., and Ellerbee, A.K., "Variable-sized bar targets for characterizing three-dimensional resolution in OCT," Biomed. Opt. Express, 3 (9), 2317–2325, (2012).
  5. Lurie, K.L, Moritz, T.J. and Ellerbee, A.K., "Design Considerations for Polarization-Sensitive Optical Coherence Tomography," Biomed. Opt. Express 3 (9), 2273–2287, (2012).
  6. Ling, W.A. and Ellerbee, A.K., "The effects of reduced bit depth on optical coherence tomography phase data," Opt. Express 20 (14), 15654–15668, (2012).
    (Also featured in Virtual Journal for Biomedical Optics)
  7. Choi, W., Hashimoto, M., Ellerbee, A.K., Chen, X., Bishop, K.J.M., Garstecki, P., Stone, H.A., and G.M. Whitesides, "Bubbles navigating through networks of microchannels," Lab Chip 8(23), 3970-3978 (2011).
  8. Stan, C.A., Guglielmini, L., Ellerbee, A.K., Caviezel, D., Stone, H.A., and G.M. Whitesides, "Sheathless hydrodynamic positioning of buoyant drops and bubbles inside microchannels," Phys. Rev. E 84, 036302 (2011).
  9. Ilievski, F., Mirica, K.A., Ellerbee, A.K., and G.M. Whitesides, "Templated three-dimensional self-assembly using magnetic levitation," Soft Matter 7 (19), 9113-9118 (2011).
  10. Mirica, K.A., Ilievski, F., Ellerbee, A.K., Shevkoplyas, S.S., and G.M. Whitesides, "Using magnetic levitation for three-dimentional self assembly," Adv. Mat. 23 (36), 4134-4140 (2011).
  11. Ellerbee, A.K., Phillips, S.T., Siegel, A.C., Mirica, K.A., Martinez, A.W., Striehl, P., Jain, N., Prentiss, M., and G.M. Whitesides, “Quantifying colorimetric assays in paper-based microfluidic devices by measuring the transmission of light through paper,” Anal. Chem. 81 (20), 8447-8452, (2009).
  12. Hashimoto, M., Feng, J., York, R.L., Ellerbee, A.K., Morrison, G., Thomas III, S.W., Mahadevan, L., and G.M. Whitesides, “Infochemistry: Encoding information as optical pulses using droplets in a microfluidic device,” J. Am. Chem. Soc. 131 (34), 12420-12429, (2009)
  13. Ellerbee, A.K., Creazzo, T.L., and J.A. Izatt, “Investigating nanoscale cellular dynamics with cross-sectional spectral domain phase microscopy,” Opt. Exp. 15 (13), 8115-8124, (2007).
  14. McDowell, E. J., Ellerbee, A.K., Choma, M. A., Applegate, B. E., and J. A. Izatt, “Spectral domain phase microscopy for local measurements of cytoskeletal rheology in cells,” J. Biomed. Opt. 12 (4), 044008, (2007).
  15. Ellerbee, A.K., and J. A. Izatt, “Phase retrieval in low-coherence interference microscopy,” Opt. Lett., 32 (4), 388-390, (2007).
  16. Choma, M.A., Ellerbee, A.K., Yazdanfar, S., and J.A. Izatt, “Doppler flow imaging of cytoplasmic flow using spectral domain phase microscopy,” J. Biomed. Opt. 11, 024014, (2006).
  17. Choma, M.A., Ellerbee, A.K., Yang, C., Creazzo, T.L., and J.A. Izatt, “Spectral-domain phase microscopy,” Opt. Lett. 30, 1162-1164, (2005).

Conference Presentations and Proceedings

  1. Lurie, K.L., Angst, R., and A.K. Ellerbee, "Volumetric mosaicking of optical coherence tomograhy for bladder visualization," Max Planck Center for Visual Computing and Communication Symposium, Stanford, CA (2014).
  2. Zarnescu, L., Sudkamp, H., Behr B., Baer, T., and A.K. Ellerbee, “Non-contact, label-free 3D imaging of developing embryos,” Annual Symposium for Reproductive Medicine, Poster Presentation, Boston, MA (2013).
  3. Zarnescu, L., Sudkamp, H., Baer, T., and A.K. Ellerbee, “Full-field Optical Coherence Tomography of Early Embryonic Development,” Center for Biomedical Imaging at Stanford Annual Symposium, (2013).
  4. Zarnescu, L., Sudkamp, H., Baer, T., and A.K. Ellerbee, “Full-field Optical Coherence Tomography of Early Embryonic Development,” Stanford University Photonics Retreat, Poster Presentation, Pacific Grove, CA (2013).
  5. Lee, H.Y., Sudkamp, H., Marvdashti, T. and A.K. Ellerbee, “Enhanced Speed in Swept-Source OCT with a Multi-band Demultiplexer,” Engineering Conferences International, Poster Presentation, Lake Tahoe, CA (2013).
  6. Marvdashti, T., Duan, L. and A.K. Ellerbee, “Combined Polarization Sensitive OCT (PS-OCT) and Raman Spectroscopy (RS) for Label-free Assessment of Molecular and Structural Abnormalities for Point-of-Care Skin Cancer Diagnostics” Stanford Photonics Research Center Annual Symposium, Poster Presentation, Stanford, CA (2013).
  7. Lurie, K.L. and A.K. Ellerbee, “Co-registration of OCT volumes for 3D bladder mosaicing,” Biomedical Engineering Society, Poster Presentation, Seattle, WA (2013).
  8. Gu, R.Y., Lurie, K.L. and A.K. Ellerbee, “Air Force chart-like phantom for measuring axial and lateral resolution in optical coherence tomography,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 85830B1-8 (2013).
  9. Marvdashti, T., Lee, H. and A.K. Ellerbee, “High-resolution spectrometer: solution to the axial resolution and imaging depth tradeoff of SD-OCT,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 85710V1-9 (2013).
  10. Lee, H.Y. and A.K. Ellerbee, “Single-shot interpixel shifting for optical coherence tomography by oblique incidence spectroscopy,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 85720I1-10 (2013).
  11. Su, N., Lurie, K.L. and A.K. Ellerbee, “Measuring Performance of Different Compression Algorithms for Fourier Domain OCT Data,” Biomedical Engineering Society, Poster Presentation, Atlanta, GA (2012).
  12. Lee, H. and A.K. Ellerbee, “Extend Imaging Depth in Spectral-domain Optical Coherence Tomography by Oblique Incidence,” Gordon Research Conference on Lasers in Medicine and Biology, Holderness, NH, (2012).
  13. Lurie, K.L., Moritz, T.J. and A.K. Ellerbee, “Considerations for Polarization-sensitive optical coherence tomography design,” Gordon Research Conference on Lasers in Medicine and Biology, Holderness, NH, (2012).
  14. Ling, W.A. and A.K. Ellerbee, “Effects of Reduced Bit-Depth on Phase Data in Common-Path Optical Coherence Tomography,“ OSA Biomed Conference, Poster Presentation, Miami, FL (2012).
  15. Lurie, K.L. and A.K. Ellerbee, “New Design Options for Polarization-Sensitive Optical Coherence Tomography,” OSA Biomed Conference, Poster Presentation, Miami, FL (2012).
  16. Marvdashti, T. and A.K. Ellerbee, “High-Resolution Spectrometer for Spectral-Domain Optical Coherence Tomography,” Stanford University Photonics Research Annual Retreat, (2012).
  17. Lee, H. and A.K. Ellerbee, “Extend Imaging Depth in Spectral-domain Optical Coherence Tomography by Oblique Incidence,” Center for Biomedical Imaging at Stanford Annual Symposium, (2012).
  18. Copeland, C.N. and A.K. Ellerbee, “Analysis of the effects of different resampling techniques for optical coherence tomography,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 8227, 82270W (2012).
  19. Copeland, C.N. and A.K. Ellerbee, “The effects of different gold standards on the accuracy of optical coherence tomography,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 8225, 822511 (2012).
  20. Lurie, K.L. and A.K. Ellerbee, “Towards Polarization-Sensitive OCT for Non-Invasive Blood Glucose Monitoring,” Stanford University Photonics Research Annual Retreat, (2011).
  21. Cohen, N., Gebru, T., Lee, H.Y., Lurie, K.L., Marvdashti, T., and A.K. Ellerbee, “Optical Coherence Tomography: Paradoxical Problem Solving,” Bio-X Annual Symposium, Stanford University (2011).
  22. Lurie, K.L. and A.K. Ellerbee, “Towards Polarization-Sensitive OCT for Non-Invasive Blood Glucose Monitoring,” International Graduate Summer School in Biophotonics, Ven, Sweden (2011).
  23. Lee, H.Y. and A.K. Ellerbee, “A Spectral Encoding-Based Approach to Real-time Volumetric Imaging with Optical Coherence Tomography,” Center for Biomedical Imaging at Stanford Annual Symposium, (2011).
  24. Choi, W., Hashimoto, M., Ellerbee, A.K., Chen, X., Bishop, K.J.M., Garstecki, P., Stone, H.A., G.M. Whitesides, “Flows of Bubbles in Microfluidic Networks,” International Mechanical Engineering Congress and Exposition, (2011).
  25. Cohen, N., Gebru, T., Lee, H.Y., Lurie, K.L., Marvdashti, T., and A.K. Ellerbee, “Optical Coherence Tomography: Advancing Technology, Impacting Disease,” Bio-X Annual Symposium, Stanford University (2011).
  26. Mirica, K. A., Ilievski, F., Ellerbee, A. K., and Whitesides, G. M., “Using magnetic levitation for meso-scale self-assembly,” 239th ACS National Meeting & Exposition, San Francisco, CA (2010).
  27. Mirica, K. A., Ellerbee, A. K., Ilievski, F., and Whitesides, G. M., “Programmable Self-Assembly of Complex Shapes in Three Dimensions,” Gordon Research Conference on Supramolecular Chemistry and Self-Assembly, Waterville, ME (2009).
  28. Ellerbee, A.K., Phillips, S.T., Siegel, A.C., Mirica, K.A., Martinez, A.W., Striehl, P., Jain, N., Prentiss, M., and G.M. Whitesides, “Quantifying colorimetric assays in paper-based microfluidic devices by measuring the transmission of light through paper,” Conference of Ford Fellows, Oral Presentation, Irvine, CA (2009).
  29. Ellerbee, A.K., Hendargo, H., Motomora, A.R., and J.A. Izatt, “Extension of Spectral Domain Phase Microscopy to Three-Dimensional Nanoscale Displacement Mapping in Cardiomyocytes,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 6861, 686108, (2008).
  30. Ellerbee, A.K., Choma, M.A., Creazzo, T.L., and J.A. Izatt, “Examining Cardiomyocyte Development with Spectral Domain Phase Microscopy,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 6441, 644109 (2007).
  31. Ellerbee, A.K., “High Speed Multidimensional Spectral Domain Phase Microscopy,” Gordon Conference on Lasers in Medicine, Poster Presentation, (2006).
  32. Ellerbee, A.K., “High Speed Spectral Domain Phase Microscopy for Quantitative Cell Surface and Cytoplasmic Flow Measurements,” OSA Topical Meeting on Biomedical Optics, Oral Presentation, (2006).
  33. Sarunic, M., Weinberg, S. Ellerbee, A., Applegate, B., and J. A. Izatt. “Full-field swept-source phase microscopy,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 6079, 60791X, (2006).
  34. Ellerbee, A.K., “Spectral domain phase microscopy: a new tool for investigating nanoscale and cellular dynamics,” National Society of Black Engineers Technical Paper Symposium, Oral Presentation, (2005).
  35. Ellerbee, A.K., Choma, M.A., McDowell, E.J., Yang, C., Creazzo, A.L., and J.A. Izatt, “Characterizing Cellular Contractility and Cytoplasmic Flow Using Spectral Domain Phase Microscopy,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 5690, 403, (2005).
  36. McDowell, E.J., Choma, M.A., Ellerbee, A.K., and J.A. Izatt, “Spectral domain phase microscopy: a new tool for measuring cellular dynamics and cytoplasmic flow,” SPIE Photonics West: BiOS Conference, Poster Presentation, Proc. SPIE 5701, 182, (2005).
  37. Ellerbee, A.K., Choma, M.A., and J.A. Izatt, “Exploring heart cell dynamics using spectral domain phase microscopy,” Gordon Conference on Lasers in Medicine, Poster Presentation, (2004).
  38. Choma, M. A., Ellerbee, A.K., Yang, C., and J.A. Izatt, “Spectral domain phase microscopy,” Gordon Conference on Lasers in Medicine, Poster Presentation, (2004).
  39. Choma, M.A., Ellerbee, A.K., Yang, C., and J.A. Izatt, “Spectral domain phase microscopy,” OSA Topical Meeting on Biomedical Optics, Oral Presentation, (2004).
  40. Ellerbee, A.K., Perrotti, L.I., and Landsman, R.E., “Temperature and Fish Immunology: Assumptions, Truths, and New Data,” Mid-Atlantic Koi Club Annual Meeting, Oral Presentation, (1997).